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🐋 Kaptive is containerized!

Published on 2026-08-03

What's Changed

  • Merge pull request #2 from klebgenomics/master by @tomdstanton in https://github.com/klebgenomics/Kaptive/pull/69

Full Changelog: https://github.com/klebgenomics/Kaptive/compare/v3.3.0...v3.3.1

Database Decentralisation 📦

Published on 2026-07-31

What's new?

Decentralised databases 📦

  • Kaptive v3.3.0 fully decouples databases from the tool.
  • Fully versioned databases.
  • Only install the databases you need.
  • Easier for curators to maintain their databases.

A new core 🍎

  • Kaptive v3.3.0 is built around a new ultra fast API-first core.
  • Allows for easier integration of new modules like plotting and annotation.
  • Objects are structured with a data-oriented-design approach leveraging numpy for SoA (structure of arrays) batching.
  • Designed for vectorised computation.
  • Easier integration of machine learning in the future.
  • Results are stored in frozen, slotted dataclasses - designed for efficiency, thread-safety and integration with web APIs.
  • Extremely fast with numba!

Introduction of rammappy 🚀

  • Kaptive is now 100% pip installable.
  • No more background sub-processes, all computation happens directly in Kaptive.
  • Safe for Web APIs.

Full Changelog: https://github.com/klebgenomics/Kaptive/compare/v3.2.2...v3.3.0

v3.2.2

Published on 2026-07-16

What's Changed

  • Migrate to mkdocs. by @tomdstanton in https://github.com/klebgenomics/Kaptive/pull/54
  • Bump urllib3 from 2.6.3 to 2.7.0 by @dependabot[bot] in https://github.com/klebgenomics/Kaptive/pull/57
  • Bump tj-actions/changed-files from 42 to 46 in /.github/workflows by @dependabot[bot] in https://github.com/klebgenomics/Kaptive/pull/60
  • Bump idna from 3.11 to 3.15 by @dependabot[bot] in https://github.com/klebgenomics/Kaptive/pull/59

New Contributors

  • @dependabot[bot] made their first contribution in https://github.com/klebgenomics/Kaptive/pull/57

Full Changelog: https://github.com/klebgenomics/Kaptive/compare/v3.2.1...v3.2.2

v3.2.1

Published on 2026-03-04

What's Changed

  • Remove dna features viewer by @tomdstanton in https://github.com/klebgenomics/Kaptive/pull/52

Full Changelog: https://github.com/klebgenomics/Kaptive/compare/v3.2.0...v3.2.1

v3.2.0

Published on 2026-02-23

What's Changed

  • Add missing links to Outputs.rst by @pvanheus in https://github.com/klebgenomics/Kaptive/pull/43
  • Update annotations for KpSC K-locus genes by @tomdstanton in https://github.com/klebgenomics/Kaptive/pull/49
  • Update KpSC K logic allele names by @tomdstanton in https://github.com/klebgenomics/Kaptive/pull/51

New Contributors

  • @pvanheus made their first contribution in https://github.com/klebgenomics/Kaptive/pull/43

Full Changelog: https://github.com/klebgenomics/Kaptive/compare/v3.1.0...v3.2.0

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