Installation

Dependencies

Kaptive requires the following software and libraries, if installing from source they will need to be installed and available in your path:

• Python >=3.9
• Biopython >=1.83
• minimap2

Download and install Kaptive

From PyPI:

pip install kaptiveInstalled!

From Bioconda:

conda install -c bioconda kaptiveInstalled!

From source:

pip install git+https://github.com/klebgenomics/Kaptive.gitInstalled!